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(American Journal of Botany. 1999;86:470-475.)
© 1999 Botanical Society of America, Inc.

The effect of seed and rosette cold treatment on germination and flowering time in some Arabidopsis thaliana (Brassicaceae) ecotypes1

Magnus Nordborg2 and Joy Bergelson

Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637

Received for publication November 17, 1997. Accepted for publication August 11, 1998.


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 LITERATURE CITED
 
The germination and flowering responses to cold treatment were investigated in 32 ecotypes of Arabidopsis thaliana. A month-long cold treatment at the seed stage decreased the time until flowering in all but one strain, whereas a 3-d cold treatment had little, or the opposing effect. A month-long cold treatment at the rosette stage also decreased the time until flowering, but was less effective than seed cold treatment. Seed and rosette cold treatments did not have an additive effect on time until flowering. Cold treatment usually increased the speed of germination, however no clear response patterns for the probability of germination were detected. These findings are discussed in relation to the life cycle of the plant.

Key Words: Arabidopsis • Brassicaceae • ecotypes • flowering • germination • vernalization • stratification


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 LITERATURE CITED
 
In 1937 Laibach started investigating the transition to flowering in Arabidopsis thaliana (reviewed in Laibach, 1951 ). By planting A. thaliana throughout the year in a common greenhouse, he found that flowering time (the time from germination to flowering) was strongly influenced by day length and that there was considerable variation among plants from different regions of Europe. He further concluded that A. thaliana is a facultative long-day plant; even though flowering time is decreased by long days, plants flower eventually at any day length. Finally, he found that cold treatment of the seed could significantly decrease flowering time, especially in late-flowering plants. Late-flowering plants that responded strongly to cold treatment were designated "winterannuelle" (winter annual), whereas early-flowering plants were designated "sommerannuelle" (summer annual), and it was noted that almost all plants belonged to the latter category; only a few plants originating in Scandinavia were winter annual.

Laibach's categorizations were purely ad hoc and do not correspond to standard ecological usage where a "summer annual" plant is one that overwinters as a seed and completes its life cycle in a single growing season, whereas a "winter annual" germinates in the fall and overwinters as a rosette before flowering the following spring. This choice of terminology has led to quite a bit of confusion in the literature. Ratcliffe (1961 , 1965 ) investigated the life cycles of several British and French populations of A. thaliana and found that they all, with the possible exception of some Scottish Highlands and Islands populations, overwintered as a rosette. He contrasted his findings with those of Laibach, suggesting that the difference in life cycle between Britain and Central Europe could be due to differences in rainfall pattern. The problem here is that the difference was one of definitions only, and all of Laibach's plants were probably winter annual as well [the comments by Laibach and the discussion following Ratcliffe (1965) is illuminating in this respect; see also Napp-Zinn (1969 , p. 292) and Rédei (1970 , p. 15)]. It seems that much of the early confusion regarding the life cycle of A. thaliana (Cetl, Dobrovolna, and Effmertova, 1965 ; Effmertova, 1967 ; Rédei, 1970 ) can be explained by inconsistencies in the terminology used by the different authors. Interestingly, a description of the life history difference between British and Continental A. thaliana, as well as Ratcliffe's explanation for it, is still to be found in floras (e.g., Grime, Hodgson, and Hunt, 1988 ).

In summary, the early literature indicates that almost all populations overwinter as rosettes, but a few populations from mountainous areas are reported to overwinter as seeds (Ratcliffe, 1965 , 1976 ; Usmanov et al., 1978 ). Further studies are clearly needed.

Today, A. thaliana has become a primary model organism for studying the induction of flowering, and much effort is being devoted to elucidating the molecular basis of the flowering response to day length and cold treatment (Martínez-Zapater et al., 1994 ; Coupland, 1995 ; Wilson and Dean, 1996 ). At least some of the variation for response to cold treatment in European A. thaliana is likely to be due to polymorphism at the FRI locus (Burn et al., 1993 ; Lee, Bleecker, and Amasino, 1993 ; Clarke and Dean, 1994 ; Clarke et al., 1995 ; Sanda, John, and Amasino, 1997 ). Given the intensity of efforts focused on the molecular genetics of flowering time, it is remarkable that we still know very little about the ecology of flowering and natural variation for this trait. From the point of view of ecological genetics, we may find ourselves in the unusual situation of understanding the genetic basis of a trait that is probably adaptive, but that has not been studied in the field. The natural life history may also be of interest to researchers interested primarily in the mechanistic aspects of the transition to flowering. For instance, if A. thaliana is a winter annual, then it would naturally experience cold as a rosette, whereas standard practice in modern studies is to cold-treat plants at the seed stage.

In a recent study, Karlsson, Sills, and Nienhuis (1993) surveyed the variation in flowering response to cold treatment and day length for a number of A. thaliana ecotypes. We carried out a similar study to gain further insight into the existing natural variation in cold treatment responses. In particular, we investigated whether there were ecotypes that were sensitive to cold treatment at one life stage (seed or rosette) but not at the other. We additionally explored whether particular ecotypes require cold treatment to germinate. Such a requirement might perhaps be expected in a summer annual plant because it would inhibit premature germination. A winter annual, in contrast, should germinate in the fall and should therefore show no such requirement.


    MATERIALS AND METHODS
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 LITERATURE CITED
 
Plant material
Thirty-two ecotypes selected to represent a range of geographic and climatic origins were used in the experiment. Seed was obtained from single parents grown together in the greenhouse, with the exception of the ecotypes Kondara and Shakhdara (Table 1), which were obtained from the Arabidopsis Biological Resource Center (ABRC) at Ohio State University, and the four ecotypes Algutsrum, Lund, Vimmerby, and Västervik, which were field-collected in Sweden.


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Table 1. The effect of different combinations of seed and rosette cold treatment on the number of days from germination to bolting.

 
Experimental design
The experimental design consisted of two cold treatments, at the seed and rosette stages, in a factorial design. There were three levels of seed treatment and two levels of rosette treatment, for a total of six treatment combinations. For each of the 32 ecotypes, there were five replicates of each treatment combination.

For each replicate, ten seeds (four seeds for Kondara and Shakhdara because not enough seed was available) were sown directly into a pot. After germination was complete, all pots were thinned to a single plant. All pots were randomly placed in flats, which rotated through positions in the incubators.

Cold treatment and growing conditions
Three different seed cold treatment regimes were used and sowing thus occurred in three phases. First, the two lots that were to be subject to long seed cold treatment were sown and placed in a 4°C growth chamber with constant low illumination. Twenty-four days later the two lots that were to be subject to short seed cold treatment were sown and placed in the same growth chamber. Three days later the final two lots, which were to be subject to no seed cold treatment, were sown and placed directly in incubators, together with the four lots from the 4°C growth chamber. The long seed cold treatment treatment thus consisted of 27 d in 4°C and the short seed cold treatment of 3 d in 4°C.

The plants were grown in Percival incubators (Percival Scientific Inc., Boone, Iowa 50036) with a 12-h photoperiod and 20°/16°C (day/night) temperature. The incubators had been modified to have incandescent as well as fluorescent light, resulting in a photosynthetically active radiation of ~100 µmol·m;ms2·s;ms1. The pots contained Pro Mix BX (Premier Horticulture Inc., Red Hill, Pennsylvania 18076).

After 52 d of growth, the three lots that were to be subjected to rosette cold treatment were put in the 4°C growth chamber for 38 d, after which they were returned to the incubators.

Data collection
Germination was scored daily by counting emerging cotyledons. Bolting was scored approximately every 2 d and noted as the date when the inflorescence appeared in the center of the rosette. The experiment was terminated after 9 mo, at which point almost all plants had flowered (Table 1). The remaining plants were moved to a greenhouse with more light to induce flowering (which usually succeeded) and enable seed collection.

Analysis
Total germination percentages for each ecotype for each treatment combination were calculated and compared using G tests with Williams' correction (Sokal and Rohlf, 1981 ). The number of days to bolting from germination was calculated for each plant ignoring any days spent in rosette cold treatment.

Some ecotype/seed treatment combinations had already started to bolt before the rosette cold treatment was scheduled to start, and others did so shortly thereafter. Since the purpose of this treatment was to investigate the effect of rosette cold treatment in promoting flowering, the bolting time data with rosette cold treatment for any plants that bolted less than 1 wk after the start of rosette cold treatment were discarded.

Mean bolting times were compared using permutation tests. The few plants that had not flowered by the end of the experiment were given a bolting date corresponding to the termination of the experiment. Means and standard deviations in these cases are therefore underestimates, and comparisons with "normal" means are conservative (Table 1).

All reported significance levels are two-tailed and have not been corrected for multiple comparisons.


    RESULTS
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 LITERATURE CITED
 
Germination
There was a great deal of variation among ecotypes in speed and probability of germination. In general, a short seed cold treatment had a positive effect on the probability of germination compared to no cold treatment, while the long seed cold treatment could have either a negative or a positive effect compared to the short cold treatment. Unlike the bolting time response (see below), there was no clear pattern to this response. About half the ecotypes showed good germination (over 85%) under all treatments with relatively small differences between treatments, whereas ecotypes that responded strongly tended to show poor germination overall.

Ecotypes whose probability of germination was very strongly promoted (at least doubling the germination percentage) by the long seed cold treatment were KZ-9, KZ-13, OY-0, Lisse, DEM-2, and MS-0. The four Swedish ecotypes all responded negatively (basically eliminating germination for Vimmerby and Västervik) to long seed cold treatment.

The effect of cold treatment on the speed of germination, measured as the number days until 95% of the seeds that were eventually to germinate had germinated, was much simpler. In all but one case, germination was faster with long cold treatment than with short or no cold treatment, and in these cases germination was usually also faster with short than with no cold treatment. One ecotype, OY-0, showed precisely the opposite response.

Bolting
Twenty-six ecotypes germinated sufficiently well for meaningful estimates of bolting time to be made. Mean bolting times and standard deviations of the means are given in Table 1, which also shows the comparisons between the means for the different treatments.

Mean bolting time varied widely between treatments and ecotypes, ranging from 1 mo with long seed cold treatment for an ecotype from Kazakhstan to 9 mo (with some plants still not flowering) without seed cold treatment for some ecotypes from Sweden and Finland. Several generalizations can be made. First, the long seed cold treatment decreased bolting time compared to no and/or short cold treatment in all but one ecotype, TSU-0 (Fig. 1). In contrast, short seed cold treatment had a less consistent and usually minor effect; bolting time was increased for seven ecotypes (significantly so for GOT-32 and Köln) and decreased for 15 (significantly so for Vimmerby and Algutsrum). Second, significant rosette cold treatment effects always entailed a decrease in bolting time, however there was often no significant effect (Fig. 2). It is harder to generalize about the interaction between seed and rosette cold treatment, except to say that rosette cold treatment less often had a significant effect on plants that had been subjected to long seed cold treatment than on plants that had not ({chi}2 test, P < 0.01).



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Fig. 1. The mean number of days from germination to bolting as a function of the level of seed cold treatment. Only ecotypes that germinated under all treatments are shown. Significance levels for the differences can be found in Table 1 .

 


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Fig. 2. The mean number of days from germination to bolting as a function of whether the plants received rosette cold treatment or not. The upper chart shows the results for plants that were not treated at the seed stage, the lower shows the same for plants that received "long" seed cold treatment. Missing values in the latter indicate that the ecotype bolted too rapidly to be subjected to rosette cold treatment (see Materials and Methods). Ecotypes that failed to germinate under either seed treatment are not shown, nor are those that bolted too rapidly even without seed cold treatment. Significance levels for the differences can be found in Table 1 .

 

    DISCUSSION
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 LITERATURE CITED
 
Germination
Although there were varied responses of germination percentage to seed cold treatment, we found no simple response such as an absolute cold treatment requirement for germination. At least two of the ecotypes tested, Kondara and Shakhdara, were strong candidates for being summer annuals (Usmanov et al., 1978 ), but this was in no way apparent from their germination response. Whenever a strong response was observed, it was associated with poor germination overall. Furthermore, limited repetitions of the experiment indicated that these responses were not repeatable; there appears to be a large maternal environmental component to seed germination (unpublished data). Although we attempted to control these effects by growing all seed donors (except those mentioned in Materials and Methods) together in the greenhouse, this appears not to have been sufficient to remove environmental influences on the variation in germination responses. Our results indicate that it may be difficult to infer the life cycle of A. thaliana from its germination response in the manner attempted here and provide further evidence that seed dormancy and germination are strongly influenced by environmental conditions (Kugler, 1951 ; Rédei, 1970 ; Baskin and Baskin, 1972 , 1983 ; Napp-Zinn, 1975 , 1976 ; Ratcliffe, 1976 ; Koorneef and Karssen, 1994 ). Ultimately, field studies will probably be necessary to determine the life cycle.

Bolting
In contrast to the germination results, the bolting results show very distinct patterns that are highly repeatable (unpublished data). It is clear that seed and rosette cold treatment are not always qualitatively equivalent. While all but two of the ecotypes responded to seed cold treatment, far fewer responded to rosette cold treatment. This agrees with previous results, mostly due to Napp-Zinn (reviewed in: Napp-Zinn, 1969 ; Rédei, 1970 ; Martínez-Zapater et al., 1994 ), that the degree of responsiveness to cold treatment often depends on the age of the plant. Nonetheless, all ecotypes that required >100 d to bolt without cold treatment responded to both seed and rosette cold treatment, and no ecotype responded to rosette cold treatment without also responding to seed cold treatment.

For many ecotypes, a combination of rosette and long seed cold treatment did not decrease bolting time relative to long seed cold treatment alone. This supports the notion that there is a point of saturation for cold treatment (Martínez-Zapater et al., 1994 ; Lee and Amasino, 1995 ) even if cold treatment is done in several stages. In this context, it is notable that our short seed cold treatment (3 d) was evidently not sufficient to significantly accelerate bolting.

It should be emphasized that flowering behavior depends strongly on light conditions as well as cold treatment, and that these effects are known to interact (Martínez-Zapater et al., 1994 ). This presumably explains the differences between our results and those of Karlsson, Sills, and Nienhuis (1993) , who identified several ecotypes that did not respond to cold treatment, including two, LER and EDI-0, that seemed to respond in our study. As can be seen from Table 1, all lines except TSU-0 seem to respond to cold treatment under our conditions. TSU-0 stands out as being strikingly insensitive to cold treatment (this ecotype was also found insensitive by Karlsson, Sills, and Nienhuis [1993 ]).

Finally, our study confirms previous results that there exists a wide range of natural variation for response to environmental influences on flowering time (reviewed in Martínez-Zapater et al., 1994 ). It seems probable that this variation is at least partially the product of adaptation to the local environment, however no clear geographic pattern is evident. All the Swedish and Finnish ecotypes tested were late flowering and responded strongly to cold treatment, but so did ecotypes from England and the Netherlands. The ecotypes from Kazakhstan, Tadjikistan, and Libya were all early flowering, but so was the ecotype from Köln, Germany. Indeed, considerable variation exists within single populations. The two ecotypes PU-2-3 and PU-2-8 were collected from the same population, but the former flowers much later than the latter without long cold treatment, whereas they are roughly synchronized with cold treatment. DEM-2 and DEM-4 were also collected from a single population, but differ widely in flowering time. This may indicate that selection does not act in a simple way on flowering behavior, which would explain the absence of clear geographic patterns.


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Table 1. Continued.

 

    FOOTNOTES
 
1 The authors thank the greenhouse staff at the University of Chicago for indispensable help, B. Widén of Lund University for collecting the four Swedish ecotypes, and I. Cetl for collecting the Czech ones. This work was supported by a Packard Fellowship and NSF grant DEB 9350363 to J.B. Back

2 Author for correspondence, current address: Department of Genetics, Lund University, 223 62 Lund, Sweden. Back


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 TOP
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 INTRODUCTION
 MATERIALS AND METHODS
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 DISCUSSION
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Baskin, J. M., and C. C. Baskin. 1972 Ecological life cycle and physiological ecology of seed germination of Arabidopsis thaliana. Canadian Journal of Botany 50: 353–360.

———, and ———. 1983 Seasonal changes in the germination responses of buried seeds of Arabidopsis thaliana and ecological interpretation. Botanical Gazette 144: 540–543.[CrossRef]

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Cetl, I., J. Dobrovolna, and E. Effmertova. 1965 Distribution of spring and winter types in the local populations of Arabidopsis thaliana (L.) Heynh. from various localities in Western Moravia. Arabidopsis Information Service 2.

Clarke, J. H., and C. Dean. 1994 Mapping FRI, a locus controlling flowering time and vernalization response in Arabidopsis thaliana. Molecular and General Genetics 242: 81–89.

———, R. Mithen, J. K. M. Brown, and C. Dean. 1995 QTL analysis of flowering time in Arabidopsis thaliana. Molecular and General Genetics 248: 278–286.

Coupland, G. 1995 Genetic and environmental control of flowering time in Arabidopsis. Trends in Genetics 11: 393–397.

Effmertova, E. 1967 The behaviour of "summer annual", "mixed", and "winter annual" natural populations as compared with early and late races in field conditions. Arabidopsis Information Service 4.

Grime, J. P., J. G. Hodgson, and R. Hunt. 1988 Comparative plant ecology: a functional approach to common British species. Unwin&Hyman, London.

Karlsson, B. H., G. R. Sills, and J. Nienhuis. 1993 Effects of photoperiod and vernalization on the number of leaves at flowering in 32 Arabidopsis thaliana (Brassicaceae) ecotypes. American Journal of Botany 80: 646–648.[CrossRef][Web of Science]

Koorneef, M., and C. M. Karssen. 1994 Seed dormancy and germination. In C. R. Somerville and E. M. Meyerowitz [eds.], Arabidopsis, 313–334. Cold Spring Harbor Laboratory Press, Plainview, NY.

Kugler, I. 1951 Untersuchungen über das Keimverhalten einiger Rassen von Arabidopsis thaliana (L.) Heynh. Ein Beitrag zum Problem der Lichtkeimung. Beiträge zur Biologie der Pflanzen 28: 211–243.

Laibach, F. 1951 Über sommer- und winterannuelle Rassen von Arabidopsis thaliana (L.) Heynh. Ein Beitrag zur Ätiologie der Blütenbildung. Beiträge zur Biologie der Pflanzen 28: 173–210.

Lee, I., and R. Amasino. 1995 Effect of vernalization, photoperiod, and light quality on the flowering phenotype of Arabidopsis plants containing the FRIGIDA gene. Plant Physiology 108: 157–162.[Abstract]

———, A. Bleecker, and R. Amasino. 1993 Analysis of naturally occurring late flowering in Arabidopsis thaliana. Molecular and General Genetics 237: 171–176.

Martínez-Zapater, J. M., G. Coupland, C. Dean, and M. Koorneef. 1994 The transition to flowering in Arabidopsis. In C. R. Somerville and E. M. Meyerowitz [eds.], Arabidopsis, 403–434. Cold Spring Harbor Laboratory Press, Plainv iew, NY.

Napp-Zinn, K. 1969 Arabidopsis thaliana (L.) Heynh. In L. T. Evans [ed.], The induction of flowering, 291–304. Cornell University Press, Ithaca, NY.

———. 1975 On the genetical basis of light requirement in seed germination of Arabidopsis. Arabidopsis Information Service 12: 10.

———. 1976 Population genetical and gene geographical aspects of germination and flowering in Arabidopsis thaliana. Arabidopsis Information Service 13.

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J. R. Stinchcombe, C. Weinig, M. Ungerer, K. M. Olsen, C. Mays, S. S. Halldorsdottir, M. D. Purugganan, and J. Schmitt
A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA
PNAS, March 30, 2004; 101(13): 4712 - 4717.
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GeneticsHome page
C. Weinig, L. A. Dorn, N. C. Kane, Z. M. German, S. S. Halldorsdottir, M. C. Ungerer, Y. Toyonaga, T. F. C. Mackay, M. D. Purugganan, and J. Schmitt
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Genetics, September 1, 2003; 165(1): 321 - 329.
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Plant Physiol.Home page
S. Gazzani, A. R. Gendall, C. Lister, and C. Dean
Analysis of the Molecular Basis of Flowering Time Variation in Arabidopsis Accessions
Plant Physiology, June 1, 2003; 132(2): 1107 - 1114.
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GeneticsHome page
C. Weinig, M. C. Ungerer, L. A. Dorn, N. C. Kane, Y. Toyonaga, S. S. Halldorsdottir, T. F. C. Mackay, M. D. Purugganan, and J. Schmitt
Novel Loci Control Variation in Reproductive Timing in Arabidopsis thaliana in Natural Environments
Genetics, December 1, 2002; 162(4): 1875 - 1884.
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Am. J. Bot.Home page
H. K. Stenoien, C. B. Fenster, H. Kuittinen, and O. Savolainen
Quantifying latitudinal clines to light responses in natural populations of Arabidopsis thaliana (Brassicaceae)
Am. J. Botany, October 1, 2002; 89(10): 1604 - 1608.
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GeneticsHome page
J. Hagenblad and M. Nordborg
Sequence Variation and Haplotype Structure Surrounding the Flowering Time Locus FRI in Arabidopsis thaliana
Genetics, May 1, 2002; 161(1): 289 - 298.
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Plant Physiol.Home page
P. V. Minorsky

Plant Physiology, May 1, 2002; 129(1): 5 - 6.
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Am. J. Bot.Home page
J. Munir, L. A. Dorn, K. Donohue, and J. Schmitt
The effect of maternal photoperiod on seasonal dormancy in Arabidopsis thaliana (Brassicaceae)
Am. J. Botany, July 1, 2001; 88(7): 1240 - 1249.
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ScienceHome page
U. Johanson, J. West, C. Lister, S. Michaels, R. Amasino, and C. Dean
Molecular Analysis of FRIGIDA, a Major Determinant of Natural Variation in Arabidopsis Flowering Time
Science, October 13, 2000; 290(5490): 344 - 347.
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