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2 Botanical Garden and Museum, University of Oslo, Sarsgate 1, N-0562 Oslo, Norway; and 3 Department of Ecology and Molecular Biology, Section of Genetics and Microbiology, The Royal Veterinary and Agricultural University, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
Received for publication June 29, 1999. Accepted for publication March 10, 2000.
| ABSTRACT |
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Key Words: Cerastium arcticum long-distance dispersal phylogeography RAPD SCAR
| INTRODUCTION |
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Reconstruction of Late Weichselian floras has shown that their composition has changed rapidly in response to climate changes. Plant fossil records from Andøya in northern Norway show, for example, that there have been repeated cycles of immigration and expansion during climatic ameliorations, resulting in decline and extinction of populations during colder phases (Alm and Birks, 1991
). Recent paleoclimatic reconstructions have demonstrated that the climate changed very rapidly (e.g., Alley et al., 1993
; Taylor et al., 1993
; Lowe and NASP Members, 1995
). In central Greenland, conditions probably switched from glacial to near-interglacial in periods of 1020 yr (Dansgaard et al., 1993
; Taylor et al., 1993
), probably inducing severe biotic responses.
Geographic patterns of intraspecific genetic variation are determined by migration history. Molecular genetics have provided plant geographers with new, powerful tools for studying intraspecific variation. Earlier inferences on migration history based on present geographic distributions can now be re-examined by studying the geographic structuring of the genetic variation. Phylogeographic variation has recently been related to the postglacial migration history of some arctic-alpine plant species, e.g., Vahlodea atropurpurea (Haraldsen, Ødegaard, and Nordal, 1991
), Draba spp. (Brochmann, Soltis, and Soltis, 1992
), Lychnis alpina (Haraldsen and Wesenberg, 1993
), Saxifraga oppositifolia (Gabrielsen et al., 1997
), S. cespitosa (Tollefsrud et al., 1998
), Dryas integrifolia (Tremblay and Schoen, 1999
), and Phippsia spp. (Aares, Nurminiemi, and Brochmann, 2000
). Several of these studies indicate that there has been recent gene flow among North Atlantic regions (e.g., Greenland, the arctic archipelago of Svalbard, Iceland, and/or Scandinavia).
Among the amphi-Atlantic disjuncts in the arctic-alpine flora, the so-called "West-arctic" species have attracted particular interest in Nordic phytogeography. These species (
30) occur in alpine Scandinavia and/or Svalbard as well as on the opposite side of the Atlantic (Greenland and/or northeastern continental North America), but they are absent from the Central European mountains and most of the remaining Arctic and Sub-Arctic (e.g., Dahl, 1963, 1987
). The current eastern Atlantic distribution area of these species (Hultén and Fries, 1986
) is situated within the Pleistocene area of glaciation (Andersen and Borns, 1994
). The present occurrence of these West-arctic species in Fennoscandia and/or Svalbard has provided the strongest argument in favor of survival in local ice-free refugia within these geographic areas throughout one or several of the Pleistocene glaciations ("the nunatak hypothesis"; e.g., Dahl, 1963, 1987
; Rønning, 1963
; Gjærevoll, 1992
).
In this paper, we report the first phylogeographic analysis of one of the West-arctic species, Cerastium arcticum Lange (Caryophyllaceae). This autogamous pioneer species (Ekstam, 1898
; Asplund, 1918
; Warming, 1920
; A. R. Hagen, University of Oslo, unpublished data) is found in the northern part of the British Isles, disjunct in the Scandinavian mountain range, the Faeroe Islands, Iceland, the northwestern arctic Russian islands, Svalbard, Greenland, and the eastern Canadian Arctic (Hultén and Fries, 1986
). Cerastium arcticum belongs to the mature C. alpinumC. arcticum polyploid complex, in which extensive and complex morphological variation has led to the recognition of several species, subspecies, and varieties (e.g., Tolmachev, 1930
; Hultén, 1956
; Böcher, 1977
). Cerastium arcticum is high-polyploid, usually with 2n = 12x = 108 (e.g., Brett, 1955
; Löve and Löve, 1956, 1975
; Jørgensen, Sørensen, and Westergaard, 1958
; Engelskjøn, 1979
), and it is highly polymorphic in morphology and occurs in a variety of habitats (Elven and Elvebakk, 1996
). The present study is part of a larger effort at the University of Oslo to unravel the evolutionary history, taxonomy, and phylogeography of the C. alpinumC. arcticum complex (cf. Hagen and Sæther, 1993
; Hagen et al., 1995
; Schjøll, 1995
; Brochmann et al., 1996
; Brysting and Hagen, 1999
; Brysting and Borgen, 2000
; Brysting and Elven, 2000
).
In this paper, we use RAPD analysis (Random Amplified Polymorphic DNA; Welsh and McClelland, 1990; Williams et al., 1990
) and SCAR analysis (Sequence Characterized Amplified Regions; Paran and Michelmore, 1993
) to address the possibility of recent trans-Atlantic dispersal of C. arcticum. Populations from most of the distribution area were examined with special reference to the partitioning of the genetic variation within and among geographic regions. RAPD analysis is simple and has been successfully used in several phylogeographic studies (e.g., Gabrielsen et al., 1997
; Tollefsrud et al., 1998
), but the method has several well-known problems and limitations. One problem is reproducibility, which may be affected by the quality and concentration of the DNA, the specific polymerase used, and the assay conditions, and it is also possible that some of the comigrating, anonymous fragments are nonhomologous (e.g., Ellsworth, Rittenhouse, and Honeycutt, 1993
; Giese et al., 1994
). The SCAR technique depends on sequence information in order to design longer primer pairs, but results in a more robust marker system (Paran and Michelmore, 1993
). Herein we report on the development of SCAR markers designed on the basis of polymorphic RAPD fragments identified in this study.
| MATERIALS AND METHODS |
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RAPD analysis
Total DNA was extracted from
100 mg fresh leaf tissue from the cultivated plants or
30 mg silica-dried leaf tissue from the field-collected plants using a modification of the cTAB (cetyltrimethylammonium bromide) protocol of Saghai-Maroof et al. (1984)
, differing primarily in the use of a 2x extraction buffer and RNase treatment. Leaf material was ground in liquid nitrogen, mixed with 700 µL extraction buffer of 65°C (1.4 mol/L NaCl, 100 mmol/L Tris-HCl (pH 8.0), 20 mmol/L EDTA, 2% cTAB, and 1% 2-mercaptoethanol), and incubated at 65°C for 45 min with shaking every 10 min. Proteins were extracted twice with 500 µL chloroform-isoamyl alcohol (24:1) for 10 min and then centrifuged at 12 000 rpm for 5 min. RNase (10 µg/mL) was added to the resulting supernatants for 30 min at 37°C, and the DNA was precipitated with ice-cold 2-propanol (two-thirds of the supernatant volume) for at least 1 h and centrifuged at 12 000 rpm for 10 min. The pellet was washed twice in 70% ethanol, vacuum-dried, and resuspended in 150 µL TE buffer (10 mmol/L Tris-HCl, 1 mmol/L EDTA, pH 8.0). Approximate DNA concentrations were estimated by visual inspection of 0.7% agarose gels run in TBE buffer (89 mmol/L Tris base, 89 mmol/L boric acid, 2 mmol/L EDTA, pH 8.3) and stained with ethidium bromide, by comparing staining intensity of the samples to a
EcoRI/HindIII marker.
PCRs (polymerase chain reaction) were modified after Williams et al. (1990)
. Reaction volumes were 20 µL with 2.5 ng genomic DNA, 0.2 µmol/L primer (Operon Technologies, Alameda, California, USA), 100 µmol/L of each dNTP (Promega, Madison, Wisconsin, USA), 1x PCR buffer [10 mmol/L Tris-HCl (pH 9.0), 50 mmol/L KCl, 1.5 mmol/L MgCl2, 0.01% gelatin, and 0.1% Triton X-100; HT Biotechnology Ltd., Cambridge, UK], and 0.25 U Super Taq polymerase (HT Biotechnology Ltd.). The reaction mixtures were overlaid with mineral oil prior to PCR to prevent evaporation. Amplifications were performed in a PTC-100 thermocycler (MJ Research Inc., Watertown, Massachusetts, USA) using microtiter plates, except for amplifications with primers of the F kit, for which a Omnigene thermocycler (Hybaid Ltd., Middlesex, UK) was used. An initial denaturing step for 2 min at 94°C was followed by 45 cycles of 1 min at 94°C, 1 min at 36°C, and 2 min at 72°C. A final extension step at 72°C for 10 min was included for extra elongation. A negative control was run for each primer. Amplification products were separated on 1.4% agarose gels run in 1x TBE buffer, detected by ethidium bromide staining, and photographed under UV light.
EcoRI/HindIII was used as a molecular size marker.
Eighty random 10-mer primers (Operon kits A, C, D, and F) were initially tested using one plant from each of four geographic regions. Twelve primers that produced strongly amplified polymorphic bands with these test templates were selected for full analysis (Table 2). The gels were scored conservatively, i.e., only the most reliable and distinct bands were scored, as 1, present, or 0, absent. The reproducibility of all initially scored bands was rechecked by comparing the profiles of a number of individual plants that each was run several times (in the first primer test, in the main analysis, and/or in final reruns) to verify marker alignment across gels.
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For each cloned RAPD marker (Table 2), two oligonucleotides were designed as SCAR primers, each consisting of the original ten bases of the RAPD primer plus the next 14 internal bases (cf. Paran and Michelmore, 1993
). The primers were obtained from Pharmacia Biotech (Uppsala, Sweden) and DNA technology ApS (Aarhus, Denmark). Amplification of genomic DNA using the SCAR primers was carried out under standard PCR conditions at high annealing temperatures using 20 ng template and 1 U Taq polymerase per reaction. The PTC-100 thermocycler was programmed for 5 min at 94°C followed by 30 cycles of 1 min at 94°C, 1 min at 60°C to 70°C, and 2 min at 72°C, followed by a final extension step at 72°C for 10 min. Amplification products were separated on 2.0% agarose gels run in 1x TBE buffer and detected by ethidium bromide staining.
Data analyses
The RAPD phenotype of each plant was expressed as a vector of zeros and ones corresponding to the scores of the RAPD bands, and the resulting matrix was analyzed using NTSYS-pc (Rohlf, 1998
). Similarities between all pairs of phenotypes were calculated using the Dice, Simple Matching, and Jaccard coefficients. The three similarity matrices were highly correlated (r = 0.99 for all combinations, P = 0.002; the normalized Mantel statistics z). The similarity matrices were subjected to UPGMA (Unweighted Pair Group Method with Arithmetic Averages), PCO (Principal Coordinate Analysis), and Minimum Spanning Tree analysis (MST), and similar results were obtained for all three similarity coefficients. Only the analyses based on Dice's coefficient are therefore presented.
Analyses of Molecular Variance (AMOVA; Excoffier, Smouse, and Quattro, 1992
) were used to partition the RAPD variation among main geographic regions, among populations within geographic regions, and among individuals within populations, using the program WINAMOVA 1.55 provided from L. Excoffier (http://anthropologie.unige.ch/ftp/comp; see also Gabrielsen et al., 1997
).
| RESULTS |
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In a PCO analysis of all RAPD phenotypes, the arctic and nonarctic population groups were clearly separated along the first axis (65.7% of the variation; Fig. 3). Because of the high proportion of the total variation extracted by the first axis in this analysis, PCO analyses were also performed separately for the arctic and the nonarctic populations to clarify the relationships within these groups. In the analysis of the nonarctic group (Fig. 4), no distinct geographic structure was identified even though the first three axes extracted a large proportion (70.4%) of the total variation. The first axis (48.5%) separated the same two groups as the UPGMA analysis (Fig. 2), both of them including Icelandic as well as Norwegian plants. In the PCO analysis of the arctic group (Fig. 5), the population from Franz Josef Land was somewhat separated from the other populations along the first axis (19.8%), whereas the populations from western Greenland, eastern Greenland, and Svalbard were highly intermingled. The minimum spanning trees superimposed on the three PCO analyses consisted of many trans-Atlantic connections (Figs. 35).
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Two of the SCARs (OPF-06900 and OPC-191000) were dominant markers resulting in patterns identical to those in the RAPD analysis, whereas a subsequent restriction fragment analysis of the third SCAR (OPC-15550) revealed that this was a codominant marker. This marker was obtained with similar intensity for all plants in the SCAR-PCR. To search for polymorphisms corresponding to the original RAPD pattern, the 550-bp SCAR fragments obtained from one plant from each of 17 populations were purified using Qiaquick gel extraction and digested with HaeIII and HhaI, respectively. The digestions revealed fragment length polymorphisms that corresponded exactly to the presence/absence pattern of the original RAPD marker. Included in this restriction fragment analysis were seven arctic populations and the nonarctic populations IC-1, NN-17, and NN-50, all of which possessed the 550-bp RAPD marker, and seven other nonarctic populations, which did not possess the 550-bp RAPD marker (cf. Fig. 2).
| DISCUSSION |
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In spite of their trans-Atlantic disjunctions, no distinct geographic structuring was observed in the molecular variation within the two lineages of C. arcticum, except that the arctic Franz Josef Land population was somewhat separated from the remaining arctic populations. Rather, many similar and even some identical multilocus phenotypes were observed across the Atlantic; one phenotype occurred in two populations separated by >1800 km. Populations from different sides of the Atlantic were to a large extent intermingled in the UPGMA and PCO analyses of the genetic data, in agreement with the AMOVA analyses, which suggest that the populations from different Atlantic regions are poorly differentiated (Figs. 25; Table 3). Within the nonarctic lineage, for example, there are two somewhat differentiated groups of populations, but both groups consist of Icelandic as well as Norwegian populations.
RAPD markers supporting the main division into an arctic and a nonarctic group of populations were converted into locus-specific SCAR markers so that the homology and identity of the crucial bands could be ascertained. While RAPD markers can be obtained inexpensively and quickly, the reliability of each individual polymorphic band as a marker is limited by its anonymity and the lack of information on the type, frequency, and uniqueness of the underlying mutation. As shown above for the five bands tested by us, there is considerable variation among RAPD bands for the details of the molecular polymorphism. The three SCAR markers developed from crucial bands not only support our interpretation, they are also tools for further, larger surveys. This applies especially to the codominant SCAR marker for which allele frequencies can be determined. We are at present trying to isolate the intact 550-bp fragment from herbarium specimens in order to check for allelic polymorphisms between geographic regions.
Thus, the results of this first phylogeographic analysis of one of the so-called "West-arctic" species, whose occurrence on both sides of the Atlantic has provided the strongest argument in favor of the "glacial survival hypothesis" for Scandinavia and Svalbard (e.g., Dahl, 1963, 1987
; Rønning, 1963
; Gjærevoll, 1992
), are contradictory to the expectations under this hypothesis. If the contemporary populations of C. arcticum (within each of the lineages identified herein) on different sides of the Atlantic Ocean have been isolated from each other since the late Tertiary (i.e., at least 23 million years) and survived throughout the Quaternary glaciations in refugia situated on both sides of the Atlantic (cf. Dahl, 1963
), these populations should have shown considerable genetic divergence. The occurrence of identical, or very similar, complex RAPD multilocus phenotypes on both sides of the Atlantic in a high-polyploid, alloploid, and autogamous species such as C. arcticum is also improbable under a less extreme version of the glacial survival hypothesis, i.e., isolation and survival in different refugia throughout the last glaciation (cf. Nordal, 1987
). Notably, these multilocus phenotypes are based on a high number (35) of polymorphic, putative loci representing widely different parts of the genome (cf. Williams et al., 1990, 1993
). The most reasonable interpretation of these data is that a very short time has been available for genetic divergence and that the present geographic distribution of each evolutionary lineage therefore results from post-Weichselian expansion across the Atlantic from one refugium for each lineage. The most probable areas for refugial survival are situated on the western side of the Atlantic (Greenland or Northeast Canada) for the arctic lineage of C. arcticum, and on the North Sea Continent or south of the North European ice sheet for the nonarctic lineage of the species (cf. Funder, 1979
; Pielou, 1991
; Andersen and Borns, 1994
; Landvik et al., 1998
; Steig, Wolfe, and Miller, 1998
).
The lack of genetic divergence within the lineages of C. arcticum is clearly most consistent with a scenario involving long-distance, trans-Atlantic dispersal after the last glaciation. Independent survival of genetically variable populations in refugia on both sides of the Atlantic throughout the last glaciation is unlikely, because genetic drift and probably new mutations in different glacial survivor populations would have resulted in more distinct divergence at RAPD loci. Divergence caused by drift would have been expected because of the autogamous reproductive system of C. arcticum and because refugial population sizes must have been limited by the extensive glaciation. In particular, if populations survived in Svalbard and Scandinavia, they must have been small because these areas were extensively glaciated (Andersen and Borns, 1994
).
The general lack of geographic structuring of the molecular variation within the two evolutionary lineages of this West-arctic species is consistent with the results of other studies of arctic-alpine plants in the North Atlantic region (Haraldsen, Ødegaard, and Nordal, 1991
; Brochmann, Soltis, and Soltis, 1992
; Haraldsen and Wesenberg, 1993
; Gabrielsen et al., 1997
; Tollefsrud et al., 1998
; Aares, Nurminiemi, and Brochmann, 2000
). This lack of geographic structure suggests that arctic-alpine plants may migrate long distances, even across sea barriers, despite their lack of classic adaptations to long-distance dispersal. The conditions for long-distance seed dispersal may, however, have been more favorable in the late glacial and early postglacial period than today, because of the considerable extension of the winter sea ice in the Atlantic at that time (Andersen and Borns, 1994
). A continuous surface of frozen sea may represent a less severe barrier to wind dispersal than open sea (cf. Savile, 1972
).
We found no particular "hot spots" with high molecular diversity in C. arcticum that could be taken as evidence for long-term isolation and differentiation in glacial refugia, although the species showed high total levels of molecular variation. Neither were distinct hot spots observed in RAPD studies of Saxifraga oppositifolia and S. cespitosa in the North Atlantic region (Gabrielsen et al., 1997
; Tollefsrud et al., 1998
). However, absence of such hot spots does not necessarily indicate absence of refugia. Arctic refugial populations may have been bottlenecked because marginal environmental conditions and small ice-free areas limited population size, in contrast to more southern refugial populations of temperate species, which usually have been examined in phylogeographic studies so far (cf. Ferris et al., 1995; Konnert and Bergmann, 1995
; Demesure, Comps, and Petit, 1996
; Hewitt, 1996
; Soltis et al., 1997
; Comes and Kadereit, 1998
; Schaal et al., 1998
; Taberlet, 1998
; Taberlet et al., 1998
).
An unexpected result of this study was that the level of intrapopulational molecular variation in the autogamous C. arcticum increased towards the north (from 15.8 to 67.7%; Table 3). In contrast, the intrapopulational proportion of the RAPD variation observed in another autogamous species in the North Atlantic region, Saxifraga cespitosa (Tollefsrud et al., 1998
), as well as that in the allogamous S. oppositifolia (Gabrielsen et al., 1997
), decreased towards the north (from southern Norway to Svalbard). More inbreeding towards the north is usually expected because of decreasing pollinator activity. Seed set experiments do not indicate that there are increasing levels of outcrossing in C. arcticum towards the north (A. R. Hagen, University of Oslo, unpublished data), which otherwise could have explained the results for this species. One possible explanation for the different levels of intrapopulational variation is that migration among populations is most frequent in the treeless arctic environment, where C. arcticum often is continuously distributed over large areas. The species has much more scattered occurrences in the Scandinavian mountains, and the populations in this area are isolated by forested valleys.
The existence of two highly divergent lineages within C. arcticum demonstrated in this study may indicate that this high-polyploid species has originated recurrently via independent polyploidizations, a hypothesis first proposed by Böcher (1977)
. What traditionally has been named C. arcticum may actually consist of two distinct, 12-ploid taxa that have different evolutionary origins and migration histories. The divergence in RAPD markers observed herein is paralleled by differentiation in morphology and isozymes (Hagen et al., 1995
; Brysting and Borgen, 2000
; Brysting and Elven, 2000
). The arctic plants are more pubescent and have smaller seeds and narrower capsules than the nonarctic plants, and they have bracts with distinct hyaline margins, in contrast to the nonarctic ones. The correct name for the arctic taxon is C. arcticum sensu stricto (cf. Hultén, 1956
), and the southern taxon should be named C. nigrescens (H. C. Watson) Edmondston ex H. C. Watson (cf. Brummit et al., 1987
; Brysting and Elven, 2000
). These two lineages of C. arcticum sensu lato are isozymically as different from each other as they are from the octoploid C. alpinum, with which both share several, but different, enzyme bands (Hagen and Sæther, 1993
; Hagen et al., 1995
; Brysting and Borgen, 2000
). It is thus possible that C. alpinum has been involved in the formation of both lineages of C. arcticum s. l. A second parent of the arctic lineage may have been restricted to the Beringian area, where several species of Cerastium occur today (Hultén, 1956, 1968
; Murray, 1995
). A second parent of the nonarctic lineage is possibly the tetraploid C. uniflorum Clairv. from the Alps (Söllner, 1953
; Böcher, 1977
; Bo
caiu, 1996
; Brysting and Borgen, 2000
; Brysting and Elven, 2000
).
| FOOTNOTES |
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4 Author for reprint requests (e-mail: christian.brochmann{at}toyen.uio.no.) ![]()
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